[Lab Manager]
 
CMIR_Image

CMIR_Image is an image display and analysis suite developed in the Interactive Data Language (IDL, Research Systems, Inc., Boulder, CO). It offers a range of flexible tools for the visualization and quantitation of a wide range of image types and formats relevant to biological imaging.

Features

Image formats:

  • TIFF
  • JPG
  • PNG
  • SRF
  • PPM
  • BMP
  • DICOM
  • SPE (WinView CCD image format)
  • IPL (IPLab data format)
  • MRGE (GE MR image format)
  • Bruker MR image format
Image display:
  • Interactive window/leveling
  • Lookup table manipulation
  • Addition of image scalebars
Image processing:
  • Invert
  • Resize
  • Crop
  • Expand
  • Flip
  • Rotate
  • Translate
  • Grayscale to RGB/RGB to grayscale
  • Slices to stack/stack to slices
  • Filter
    • Average
    • Median
    • Morphologic
    • Noise subtraction
  • Fit
    • T1
    • T2
    • DeltaR2*
    • Dynamic contrast
  • Fusion of two images
  • Mask
  • Explicit formulation of expressions with images as arguments
  • Normalization
ROI Analysis:
  • Definition
    • Rectangular
    • Elliptical
    • Freehand
    • Intensity contouring
    • Region growing
    • Grouping into composite ROIs
    • Input/output from/to ROI files
  • Manipulation
    • Placement
    • Rotation
    • Edit points
    • Resampling
  • Analysis
    • Image pixel distribution statistics
    • Image pixel distribution histogram
    • Export to text file